PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00047601-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bZIP
Protein Properties Length: 162aa    MW: 18009 Da    PI: 9.9442
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00047601-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_136.69.7e-1283127145
                       XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                       +ke kr +r+ +NR++A+  R+RKka++ eLe+k+keL++ N++L
  PSME_00047601-RA  83 DKEHKRLKRLLRNRVSAQQARERKKAYLNELETKAKELQQRNSEL 127
                       5899**************************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.2E-1583147IPR004827Basic-leucine zipper domain
PfamPF001701.3E-1184145IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.34685148IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.81E-1387145No hitNo description
Gene3DG3DSA:1.20.5.1703.9E-1687147No hitNo description
CDDcd147042.39E-1888138No hitNo description
PROSITE patternPS00036090105IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MQATAPDVSG SASLDKFITS SSGDPNEARN ESVNESDDDI RRVPEMGGQT ALVVNSDLGV  60
KTESEQASVA GSSQRKRGRT PADKEHKRLK RLLRNRVSAQ QARERKKAYL NELETKAKEL  120
QQRNSELEER VSTFQNENFM LRQILKNMTA KNKAGGFGEI EG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0867601e-149EF086760.1 Picea sitchensis clone WS02917_P14 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013668083.16e-49PREDICTED: transcription factor HY5
SwissprotQ9SM507e-46HY5_SOLLC; Transcription factor HY5
TrEMBLA9NZF53e-94A9NZF5_PICSI; Putative uncharacterized protein
STRINGBra008976.1-P7e-47(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11260.11e-45bZIP family protein